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Why Is My Metagenome Assembly So Fragmented? Common Causes and Fixes

Rubén Javier López May 15, 2026 Metagenomics & Microbiome No Comments
Why Is My Metagenome Assembly So Fragmented? Common Causes and Fixes
Metagenome assembly is one of the most useful steps in shotgun metagenomics, but it is also one of the most frustrating. You may start with millions of high-quality reads, …
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Common Metagenomics Mistakes and How to Avoid Them

Rubén Javier López May 4, 2026 Metagenomics & Microbiome No Comments
Common Metagenomics Mistakes and How to Avoid Them
Metagenomics can generate powerful insights into microbial communities, from taxonomic composition to metabolic potential and genome recovery. But it is also one of the easiest omics approaches to get …
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Prokka vs PGAP vs RAST: Which Annotation Pipeline Should You Use?

Rubén Javier López April 27, 2026 Bioinformatic Workflows No Comments
Prokka vs PGAP vs RAST: Which Annotation Pipeline Should You Use?
If you have assembled a bacterial or archaeal genome, the next question is usually straightforward: which annotation pipeline should you use? Three of the most widely used options are …
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Recent Posts

  • How to Submit Proteomics Data to PRIDE: A Practical Guide
  • How to Choose a Bioinformatics Service Provider
  • How to Interpret Differential Gene Expression Results
  • Low-Quality MAGs: Common Causes and Fixes
  • Kraken2 vs Kaiju vs MetaPhlAn: Which Taxonomic Profiler Should You Use?

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